Sentence examples for predicted sequence for the from inspiring English sources
The predicted sequence for the signal peptide is underlined.
The predicted sequence for the HP-1/HepA ortholog in F. graminearum was obtained by conducting a BLAST search (http://www.broadinstitute.org) using the A. nidulans HepA aminoacid sequence as a query.
Comparison of the predicted sequence for the cytoplasmic tail of SAP126 shows large sequence variability for the cytoplasmic tails in different algae (e.g., supplementary fig. S4, Supplementary Material online, for SAP126).
In comparing ribosomal protein L7a homologs from various organisms, we noted that the predicted sequence for the G. lamblia protein [GenBank: EAA41652] appeared abnormally truncated at the C-terminal end relative to other eukaryotic and archaeal sequences, terminating at position 171 of S. cerevisiae L7a (Fig. 1).
When the initial prediction using the strict threshold failed, we manually checked the predicted sequences for the conservation of palindromic structure in the 7-12-bp and 17-22-bp 17-22-bp 17-22-bpndidates that were located close to the origin of repositions were removed becande the displacandidatesa dif sequence near thatorigin significantly reduces the growererate [ 24].
These reads were processed by AmpliconNoise (Quince et al., 2011), which attempts to remove sequencing error and generates a set of predicted sequences for the amplicons.
Q RT-PCR was performed on the Evi32 tumors using the VEGA predicted sequence for Prdm14 as a guide.
The predicted sequence for MamJ-like is somewhat shorter (375 residues for MamJ-like vs. 506 for MamJ) and lacks the characteristic acidic repeats of MamJ proteins [23].
Mouse Kv1.7 cloning (mKv1.7 long form, 98% sequence identity with the predicted sequence for rat Kv1.7) has been described by Finol-Urdaneta et al (Finol-Urdaneta et al, 2006).
In cases where the correct orthologs were split into more than one Ensembl model, or lacked specific domains compared to chicken due to incomplete model predictions, we reconstructed the complete predicted coding sequence by combining any partial models, or used multiple partial segments of the predicted sequence for our analysis.
ZtAtg4 and ZtAtg8 were identified in the same way, using the predicted sequences for Atg4 and Atg8 from M. oryzae (accession numbers: ACJ06587.1 and ACJ06588.1, respectively).
