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The predicted conservation of backbone flexibility is consistent with natural expectations.
The predicted conservation properties are confirmed by inviscid simulations on both uniform and nonuniform grids.
The predicted conservation properties are demonstrated numerically in inviscid flow simulations.
The predicted conservation properties are demonstrated numerically in simulations of inviscid white noise, performed in a two-dimensional periodic domain.
Figure 4B correlates CSS and RSS plots, along the alignment, with the predicted conservation of secondary structure of RIFIN proteins.
This I C NPS score was used to rank homologs of the query protein by their predicted conservation, of which the top ten were chosen to undergo a form of majority vote, where each residue was given a score based on the ratio of positive to negative votes.
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While physiological functions of RIFIN proteins remain obscure, it is expected that future focus on RIFIN sub-families, the 25 AA insertion/deletion and the predicted conservation-shifted sites between these sub-groups will help to simplify the quest for understanding their biological roles in the parasite.
Within the region we implcated in prostate cancer risk, a genome-wide effort to predict conservation of RNA secondary structure using the computer program, EvoFold [34], detected a 61-bp conserved structure surrounding the SNP 148444.
It also reveals "gaps" between the predicted carbon conservation map and regional plans for conservation, particularly showing the need to consider incorporating woodlots into privately owned farms on flat uplands with deep soil profiles.
These novel cases of translation readthrough exhibit lower conservation scores and lower readthrough rates than those predicted by conservation; the nucleotide character of these novel readthrough regions is intermediate between coding regions and 3′ UTRs.
Indeed, when the sequence conservation levels of target sites identified by the two methods were compared, Made1 related targets were found to be significantly less conserved, on average, than miRanda predicted targets (conservation scores: Made1 targets = 0.082±0.017 miRanda targets = 0.319±0.007; t = 11.27 P = 5.7e-29 Student's ttest).
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