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In this test most strand and helix elements (all "core" helices) described in the crystal structure were correctly predicted by the method, increasing our confidence in the reliability of other predictions.
The secondary structure of CgPAD was predicted by the method of [Kabsch and Sander (1983)].
The measured mid-span displacements at failure were also consistent with those predicted by the method.
The pressure loading time history caused by the blast wave was predicted by the method.
The metallurgical structure field after heat treatment was predicted by the method based on time-temperature-transformation (TTT) curves.
Mean square responses are predicted by the method of moments for the cases of transverse and angular (tilting) oscillations.
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Concerning the phylogenetic tree, rearrangements between the genomes were not predicted by the methods presented in this paper.
Enrichment ratio was estimated as the proportion of disease genes predicted by the methods divided by the disease genes within all benchmarking set as: (3) Where ΣDG is all disease genes and ΣG is total number of genes considered here.
The incomplete sampling may also skew performance estimates: the variants most trivially expected to be neutral might be predicted by the methods but might not be tested experimentally because they are simple to guess.
In summary, in yeast there are 42 different tRNA isoacceptors, of which 23 tRNAs have trivial solutions, 11 have previously been experimentally determined (Johansson et al., 2008) and 8 are predicted by the methods herein.
Selected elastic properties predicted by the proposed method are compared with values obtained by another theoretical method.
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