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The specification categories were assigned to the four specification areas precision, coverage, personal factors and broad concepts.
2) Whatever k and N values, BrSmoteSvm performs better than other methods in the evaluation of Average precision, Coverage, One-error and Ranking loss except for Hamming loss.
The experiments showed that the BrSmoteSvm had a better results comparing to other multi-label classifiers in the evaluation criteria of Average precision, Coverage, One-error, Ranking loss.
The four abovementioned specification areas (i.e. precision, coverage, personal factors, broad concepts) will serve as a structuring device for presenting the study results.
The presentation of results was oriented on Lee and Carlin's [ 28], but the parameter for precision, coverage, was replaced by the RMSE.
Concepts not appropriately classifiable with ICF categories were labeled as specification categories (i.e. context-specific additions) and were assigned to predefined specification areas (i.e. precision, coverage, personal factors, and broad concepts).
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We plotted precision-coverage curves, which are the standard for determining method performance.
Consistent with the precision-coverage results, this again indicates that our co-expression networks can efficiently identify known meiotic genes.
To this end, we sorted metagene pairs by Pearson correlation coefficient in each microarray and plotted precision-coverage curves to evaluate co-expression in individual microarrays using known meiotic genes (Additional file 1, Figure S2).
Similar to the results obtained from precision-coverage curves, the conserved co-expression approach showed no improvement for the yeast study in terms of enrichment of meiosis-related GO terms, but improved the enrichment of mammalian meiosis-related GO terms (compare Additional file 1, Table S3 with Table 2 and Additional file 1, Table S1 and Table S2).
"We have developed new computational representations, algorithms, and tools allowing analysts to achieve unprecedented precision and coverage of complex socio-cultural phenomena," says Davulcu.
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