Sentence examples for practice pipeline from inspiring English sources

For a few years, bcbionextgen has been processing samples for the so called "best practice" pipeline at SciLifeLab.

A best practice pipeline based on the bcbio-nextgen framework [ 21] was utilised for the processing and analysis of all data.

The real need is for Europe to reduce its dependence on Russia which would point instead to persisting with Nabucco, a pipeline intended one day to supply gas from Azerbaijan and (perhaps) Central Asia via Turkey, bypassing Russian territory altogether.Pipelines or pipedreams?In practice, pipelines are hugely expensive, environmentally risky and take years to construct.

However, as no matched normals were analysed and there are no mature, best practice pipelines for tumour-only analysis, it was decided to utilise these mature best practice germline variant calling pipelines for variant detection here.

It is designed for large-scale analysis pipelines such as The Cancer Genome Atlas (TCGA) [23] best practices pipeline for calculating gene- and isoform-level expression values from RNA-seq data.

The GATK [16] best practices pipeline for germline SNP and indel discovery in whole-genome and whole-exome sequence (https://software.broadinstitute.org/gatk/best-practices/bp_3step.php case=GermShortWGS) is often used as reference for scalable genomics data analysis pipelines.org/gatk/best-practices/bp_3step.php case=GermShortWGS

However, there are mature, if imperfect, algorithms available for these tasks, and widely used tools, such as the GATK best practices pipeline [ 2], provide high-quality variant calls.

This trend has been confirmed in pipeline practice.

However, in practice, the gas pipeline capacities are typically fixed.

Changed global and local contexts require a review of food assistance policy and practice, particularly commodity pipeline issues in transitional settings.

Analysis-ready BAM files were generated for both MiSeq and HiSeq with the best practices data processing pipeline (BWA alignment, Picard's Mark Duplicates, GATK's Base Quality Score Recalibration, and GATK's Indel Realignment).