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No additional regions were identified when considering FST within each breed which suggested less power to detect footprints of selection using population-specific FST estimates.
This could lead to an underestimation of codons under selection in SO clusters as codeml has more power to detect footprints of positive selection in longer/larger alignments [ 39].
Using site models, dN/ dS-based tests have the greatest power to detect footprints of selection in genes involved in co-evolutionary processes as a limited subset of their codons is repeatedly subject to positive selection (reviewed by [ 44]).
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However, we must address several issues before attempting to detect footprints of selection against clones.
We analyzed diversity data in order to detect footprints of recent selection and estimate the strength of selection on the variants analyzed.
The edifice itself was an architectural monstrosity with an elaborate system of gun towers, barbed wire, and even a moat made of sand to detect footprints.
We describe here a novel method to detect footprints generated by transposon remobilization, which revealed minimal evidence of positive selection in tumors.
These characteristics of the selected model impart the highest predicted rate of transposon remobilization possible in SB-induced tumors, providing the greatest sensitivity to detect footprints.
The study had 80% power to detect an OR of 1.7 and 94% power to detect an OR of 2.0.
We had 80% power to detect hazards ratios of 1.38.
Finally, we could not detect footprints of WGD in segments that contained the centromere.
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