This score is the ratio between the number of FFLs with this TF –as Y– found in E.coli's network, and the maximum number of FFLs that such TF could potentially assemble (given by the product of the number of upstream TFs regulating Y and its regulon size, Fig. 2.A, and Text S1 section 2 and Figs. S1, S2, S3, S4).
By the assembly simulation, the tiny scaffolds which were potentially perfectly assembled were 28% for EcoRI and 47% for BsaXI, indicating 2b-RAD using BsaXI were more effective in chromosomes assembly.
High confidence genes were filtered from potentially erroneously assembled transcripts based on homology to known proteins and read coverage of the transcript.
Recently, a more detailed analysis of protein signalling complexes induced by TNF/TNFR1 binding reveals that two major complexes can potentially be assembled after TNF stimulation (Micheau and Tschopp, 2003).
Guided by the previously determined three-dimensional structure of the catalytic subunit, we altered its sequence such that it could potentially self-assemble thereby enabling its catalytic activity.
On one hand, RNA-Seq reads from multiple samples could potentially help assemble transcripts better than reads from only one sample, since the samples can be correlated.
We therefore explored whether sequencing mixed samples could potentially yield complete, assembled cyanophage genomes.
In contrast to conventional constant field drift tube and traveling wave devices, SLIM devices can potentially be readily assembled into many alternative arrangements.
In contrast to conventional constant field drift tube and traveling wave devices, SLIM can potentially be readily assembled into many alternative arrangements.
Unlike the silkworm, the individual sequenced for the chicken genome was a female (Hillier et al. 2004); therefore, the Z chromosome is potentially less well assembled than the autosomes because it was sequenced only half as deeply.
