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To predict potential extant interactions, we consider pairs of proteins with no interaction in the input data but between which the probability output by Algorithm 2 is relatively high.
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Determining whether liquid water exists on the Martian surface is central to understanding the hydrologic cycle and potential for extant life on Mars.
Discovery and utilization of polyketides can be facilitated by understanding the evolutionary processes that gave rise to the biosynthetic machinery and the natural product potential of extant organisms.
Networks are especially appropriate for inferring intraspecific gene genealogies because of the potential for extant ancestral nodes and multifurcating relationships [ 29].
This implies that deep evolutionary history may create constraints on the evolutionary potential of extant species (Ackerly 2003; Kimura 2004; Donoghue 2008; Matzkin et al. 2009).
"Mars is looking more and more like a potential habitat for extant life that could be transferred from Earth" said NASA's John Grunsfeld.
Combined with the presence of nitrogen and carbon dioxide both necessities for human life on the planet, it means that, "Mars is looking more and more like a potential habitat for extant life that could be transferred from Earth one way or another.
As the hypergraph encodes as its vertices all potential protein interactions both extant and ancestral the task of predicting scores for such interactions is straightforward.
Other species reported from the Jurassic, together with O. pluma (Paleogene) and O. wehrii (Neogene), are representatives of the (paraphyletic) subgenus Osmunda sensu Miller, including potential ancestors of extant species of subgenus Osmunda and Claytosmunda.
The remarkable similarity between probabilities calculated using parameters estimated from nongenomic (transcriptome and "neutral" RAD-seq data sets) and genomic data sets demonstrates the potential of using extant reduced representation data sets for planning further RAD sequencing projects.
Further, as posterior probabilities are provided for all potential interactions (including extant ones) that participate in the ensemble, we are able to impute missing interactions and to quantify the consistency in terms of evolutionary parsimony of a given set of interactions.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com