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In one post, a CDD advocate explains how the practice is merely a natural, mutual impulse: .
mexicana: thioredoxin domain (CDD: 32932), tat-binding protein 1 (CDD: 148614), sterile alpha motif (SAM) domain of bicaudal C homolog protein 1 (BCDD, CDD: 188919), hydrolase (CDD: 188206), and ATPase (CDD: 190944).
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CDD Forum - Oh, The Places You'll Go!
NCBI conserved domain database (CDD) (https://www.ncbi.nlm.nih.gov/cdd/) was used to identify any domain or motif based on GmSKRP1/2 proteins sequence.
Marchler-Bauer, A. et al. CDD: NCBI's conserved domain database.
Marchler-Bauer, A. et al. CDD: a Conserved Domain Database for the functional annotation of proteins.
Meanwhile the addition of CDD also increased the efficiency of forming LCB structure.
The MecIm repressor was predicted to contain an N-terminal DNA-binding domain (Met1-Val73) with a winged helix-turn-helix structure matching entries cl21459 and pfam12802 in the Conserved Domain Database (CDD) (https://www.ncbi.nlm.nih.gov/cdd/).nih.gov/cdd/
The three orfs orf21-orf233) of McCIIMD0819 encode hypothetical proteins: ORF21 contained a putative domain of bacteriocin-processing endopeptidases (CDD: cl00296) and ORF23 contained a domain for AraC family transcriptional regulators (CDD: COG3708).
The CDD was another co-signatory.
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