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The altered CIEF profile demonstrated the possible conformation change due to the binding of the drug.
The design of the individual pri-miR mimics enabled the modular assembly into multimeric mimics of any possible conformation.
A 2.2-Å crystal structure of 4D11 Fv bound to the eight-residue epitope NKENCGAA provided valuable insight into the possible conformation of the C-terminal region of MSP2 on the parasite.
One possible conformation can be represented as a pyrene-POSS molecule laying flat on a graphene sheet (Figure 7b) and gives the projection area of 310 Å2.
10 1 D CH (Table S3, Electronic supplementary material) were extracted from the spectra and they were used to calculate the alignment tensor for each possible conformation using the SVD method [22].
The initial structure of each possible conformation was built with Discovery Studio 2.5 (Accelrys) and all trial structures were first minimized based on molecular mechanics calculations (CFF force field) [35] and followed by DFT optimizations at B3LYP/6-31G B3LYP/6-31G
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The central hypothesis of this study is that while not all small molecules have been crystallized in all possible conformations, the conformational space accessible to sufficiently small fragments is adequately sampled.
The resulting space, which contains all possible conformations, represents the conformational space of the molecule.
We present a new program for conformer generation, Confab, which aims to generate diverse low energy conformers that span the space of all possible conformations.
The simulation results suggest that out of the two possible conformations of the FSI− anion (Supplementary Fig. 15), the C2 (trans) conformer is more stable by 0.57 eV than the C1 (cis) conformer, which is very much in agreement with the previous calculations70.
If the conformational space is sufficiently small, systematic approaches can create all possible conformations iteratively and keep all low-energy conformations.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com