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We also find both positive (probe 21 winter 2009/2010) and negative (probe 25) relationships (Fig. 7 37,41,42.
This allowed for thresholding and detection of positive probe staining on a single-cell basis to quantify average number of probe copies per cell.
In this study, we called a positive probe if 75% or more of its measurements were positive.
We assigned a probability of 1 to a putative TF region of a positive probe, 0 to a negative probe, and 0.5 to an obscure probe.
They are instructed to respond whether the probe item was present in the memory set (i.e., positive probe) or was absent (i.e., negative probe).
Based on the distribution of Z-scores, we defined a positive probe as having a score higher than 0.2 (Figure S2).
The date of diagnosis of MDR-TB was defined as the date of recognition, confirmed either by a positive probe for an rpoB mutation or culture sensitivity results confirming at least rifampicin and isoniazid resistance.
We divided all the probes into positive and negative sets using the p-value calculated by an error model: if p-value<0.001, positive probe; if p-value>0.1, negative probes.
The value of the positive fraction (pf) was calculated for each probe set as the number of positive probe pairs divided by the total number of probe pairs in a probe set.
Probe responses were button presses indicating whether the probe word was an item in the immediately presented memory set (positive probe; right index finger) or was not a member of this set (negative probe; right middle finger).
The positive fraction (PosFrac) was calculated for each probe set as the number of positive probe pairs divided by the total number of probe pairs in a probe set.
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