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Table 1 The cis -acting elements related to tissue-specific expression identified in pSH4 promoter Name Motif Position Putative regulatory function (references in parentheses) TRAB1 CAACGTGTGAC −1775 Binding site for ABA signal transaction gene TRAB1 (Hobo et al. 1999).
Criteria used for the automatic pre-annotation step were: CDS considered as Probable IF %similarity >= 60 OR (IF %similary >= 35 AND START at identical position); Putative IF NOT Probable AND IF %similarity >= 35.
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HiCUP identifies and removes such sequences by positioning putative di-tags on an in silico digestion of the reference genome.
In fifteen such alignment positions, putative functional residues were predicted in at least 40% of either Hmd enzymes or paralogs.
In five of these fifteen alignment positions, putative functional sites were predicted in at least 40% of Hmd enzymes and at least 40% of Hmd paralogs.
It gives the impression he still speaks as a backbencher, able to speculate from the sidelines, and not engage with "hard choices" from the position of putative premier.
At this position a putative NF-1 binding site exists and is disrupted by the SNP rs490683, changing the sequence from GCCA to CCCA.
Therefore, at this position a putative major QTL for drought stress and leaf senescence may be located.
Well-separated peaks within this histogram, containing a threshold number of localizations, indicate the position of putative NPCs and were selected for further study.
The set of promoters with the CpG density and the position of putative HIF binding sites are supplied as Supplemental data file 1.
The expectation from this cross was that RILs containing Ler-0 alleles at the position of putative QTL would show a higher frequency of seedlings with stem cell defects than lines containing Col-0 atleles athehe same position.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com