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This situation may not mean an absence variation, but the position of variation might be smaller.
SAMtools takes into account the number of reads, quality of reads, and quality of single bases at the position of variation.
This resulted in a table with UniProtKB accession numbers and position of variation, the variation and the data source (Table S2).
In their introns, we established informative markers, showing the genotypes (IVS for 'intervening sequence' followed by intron number, intron position of variation, and genotype of strains GRZ/MZM-0403 GRZ/MZM-0403 + 119 TT/TCDC42K1 IVS5 + 30 CC/TT, and RAE119VS4 + 37 CC/TT/TC
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Variant files are displayed in rows above the reference genomic annotation, with lines representing the position of variations from the reference DNA sequence.
First, each sample was aligned against an external genotype 1a reference sequence [32], and positions of variation relative to the reference were identified for each sample.
SNP calling procedures map the sequenced genome to a reference and examine positions of variation from the reference.
Histograms were analyzed using the dpac v2.0 software (Partec), which determines peak position, coefficient of variation (CV), and the relative ploidy index of the samples.
RGT49134 (4860 bp) exhibited 229 positions of variations that were distributed in three genes: norF, norR, and fumA.
However, for a single sensor, the position of PWV variation does not affect the performance of the sensor.
The position of the variation relative to the regulatory element is displayed in the HNF4A PSSM sequence logo.
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