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After 15 years of Labor government in the territory, there was an expectation that a surge of support to the Liberals could deliver them government but the Liberals ended up falling backwards, leaving the centre-left parties in a stronger position in the assembly.
For contig closure, a fosmid library was made in the EpiFOS vector (Epicentre Biotechnologies) and clones were end-sequenced to locate their position in the assembly.
However, we do have quality value estimates for each position in the assembly ftp://ftp.hgsc.bcm.tmc.edu/pub/data/MhaemolyticaPHL213/MhaemPHL213-10Aug2006-scaffolds.qual and we filtered SNPs to eliminate regions in the A1 assembly that are of Q-value <60.
Each read within a pair was mapped independently using the -x flag, so that each read is mapped to the position in the assembly with the best alignment score (regardless of where its mate was mapped).
We take a simple reversible mutation model (3) and let (4) Consider the model partially described by having position i in trace 1 aligned with position j in trace 2. The posterior pmf for the latent true nucleotide state is (5) where k is the position in the assembly corresponding to i and j in traces 1 and 2, respectively.
In contrast to single cell islands [8,13], keratinocytes spreading on collagen rings formed cell cell contacts and experienced subtle differences in cell cell and cell ECM adhesions depending on their position in the assembly (periphery or centre) and the size of the non-adhesive patch (Fig. 1).
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We assigned quality scores to each position in the assemblies by calculating separately for each species the sum of the qualities of all nucleotides at that particular position.
We assigned GO categories to each nucleotide position in the assemblies based on the closest Arabidopsis thaliana homolog, and looked for categories with over- or under-representation of non-synonymous SNPs.
Neutron and photon flux spectra were measured at several positions in the assembly.
The B, C and D positions in the assembly are composed of either τ or (in E. coli) γ ATPase proteins.
The method has a large radius of convergence and is able to refine the coarse component positions in the assembly that were generated by the IQP method.
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