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For example, the most labile or divergent portions of a reference genome standout as light-coloured regions adjacent to the reference ring, while well-conserved portions of the reference give rise to darkly-coloured arcs that form "spikes" of conservation extending towards the centre of the map.
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A key question in microbial ecology is which portions of a phylogenetic reference tree are differentially represented in specific groups of samples.
It uses dynamic programming to efficiently identify the portion of a long reference signal that best matches another signal.
It also allowed us to compare categories based on the portion of all references within a perspective (i.e., pros of smoking, cons of smoking, pros of quitting, cons of quitting).
We then compared their answers against the corresponding number of portions based on a reference instrument from the U.K. Food Standards Agency (based on customary consumption and used for food labelling) (FSA, 2002).
The inclusion of the reference leads to a seemingly superfluous reference vs. reference BLAST analysis that actually serves an important purpose it reveals portions of the reference that are unable to produce BLAST hits, due to ambiguous bases, BLAST filtering, or an absence of protein-coding sequences (in the case of protein or translated BLAST searches).
In this study, subjects were given the choice to report their intakes in terms of grams or as a function of a reference portion size.
Sequences with homology to ICE and phage genes were concentrated in the accessory portions of the reference P. aeruginosa genomes.
Reads that had two segments of length >20 that mapped to noncontiguous portions of the reference genome were characterized as chimeric.
By contrast, we allow some vertices and edges to be ignored because some portions of the reference genome might not appear in the target genome.
When there is similarity between a portion of the reference sequence and any part of a comparison sequence, a coloured arc is drawn beneath the region of the reference sequence showing similarity, in the appropriate comparison ring.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com