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In general, the larger a genome size is, the larger is the portion of repeats in the genome.
Comparison of the two genomes revealed that both predicted proteins contain a central portion of repeats with a periodicity of 28 residues and that the GT1 protein is predicted to contain an additional three repeats (data not shown).
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The N-terminal portion of repeat 9 was crucial.
As with fibronectin binding, the N-terminal portion of repeat 9 was particularly sensitive to alterations.
Human genome has a much greater portion of repeat sequences and it is believed there is a correlation between genome size and repeat content.
Although AVFs generally require fewer interventions than arteriovenous grafts (AVGs) to maintain patency, some sites of venous stenosis account for a large portion of repeated interventions.
Moreover, use of long shotgun sequences alone, such as 454 reads, would resolve assembly ambiguity across a large portion of repeat regions detected among these mitochondrial genomes (Additional file 8: Figure S6).
We previously showed that two separate regions in fibronectin, the N-terminal and the adjoining gelatin-binding domains, are recognized by recombinant Lig proteins comprising the variable immunoglobulin-like repeats (C-terminal half of LigA, repeats 7' to 13, and the middle portion of LigB, repeats 7' to 12; the proteins LigA U and LigB U1, respectively [15]).
The high frequency of dinucleotide and trinucleotide repeats is consistent with the situation in most other plant species including the cucurbits cucumber and watermelon [ 29- 31]; however, the significantly high portion of dekanucleotide repeats could be a feature of the bottle gourd genome although dekanucleotide repeats is also common in other plant genomes such as cowpea [ 31].
Quite a large portion of Alu repeats have Bst2UI site at position 3.
It is possible that these remaining 426 introns also contain a portion of decayed repeats that cannot be recognized using the novel identification algorithms.
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