Sentence examples for portion of alignments from inspiring English sources
This algorithm permits the use of a more lenient Smith-Waterman score, since eventually the junk portion of alignments (with respect to the reference genome or inserted sequences) will be trimmed off.
In Prefab, the reference alignment is defined as the portions of alignments consistently aligned by two structural aligners: CE (Shindyalov and Bourne, 1998) and DALI (Holm and Sander, 1995).
Probability of a portion of alignment to account for one of the three topological alternatives was calculated and plotted in figure 3.
[ 49] exploit such an approach when sampling over the joint space of trees and sequence alignments; when proposing an update to τ, these authors integrate over the smaller portion of alignment-space affected by jumping from the current to proposed tree; then, given the new tree, re-sample a consistent and probable alignment.
We analyzed all columns located in the conserved portions of alignments and are conserved in the outgroup (similar to RGC_CA restrictions).
A large portion of the alignments were homologous to insects, with the majority (45 %) being similar to sequences of Bombyx mori (Lepidoptera: Bombycidae).
For the ortholog groups used for molecular evolution analyses, we then extracted the portion of the alignments with representation from all taxa.
After aligning the sequences of each triplet with Clustal W 2.0 [ 114], we extracted the portion of the alignments containing all three orthologous sequences and trimmed partial codons at the 5' and 3' ends (based on the A. thaliana sequence).
An alignment is said to match a query to a coding region if the subject portion of the alignment overlaps the coding region and is on the same strand.
The Candor Spencer portion of the alignment had been part of NY 53 during the 1920s and part of NY 223 since 1930.
NY 120A was truncated to consist only of the Ridge Street portion of its alignment while NY 120B was extended northwest along King Street to NY 120 in North Castle and southward along NY 119 and Ridge Street to a terminus at NY 120 in Rye.
