We captured all the members of an isolated population, tagged them, and released them back into the field.
Because we did not know in advance the extent to which the population from Sonora would be accurately modeled in polymorphic site frequency and in LD by the EA and IA resequencing populations, tagging polymorphisms were ascertained independently in the IA and the EA populations.
Therefore, we used information from smolts of other Fraser River populations tagged as part of the POST project to better estimate p on river lines.
The most associated Filipino MHC SNP, rs9271366, which acts as a surrogate marker for HLA-DRB1*15:02 in this population, tags HLA-DRB1*15:01 in populations of European ancestry (r=0.94 (UK controls); r=0.77 (Spanish controls)) and, as such, shows disease association in European SLE with ORs of approximately 1.4 (table S7 in online supplement).
In this context, a recombinant inbred line mapping population (TAG 24 × ICGV 86031) was used to identify markers associated with quantitative trait loci (QTLs) for yield and yield related traits at two important locations of West Africa under well watered and water stress conditions.
Therefore, this study was conducted to phenotype an existing recombinant inbred line (RIL) population (TAG 24 × ICGV 86031) for yield related traits and examine their relationship with yield under well watered (WW) and water stress (WS) conditions in Niger and Senegal, and then compare to QTLs previously identified in an Indian context.
These studies will include tissue sampling, population surveys, tagging, and several types of acoustical monitoring.
Selection of tagSNPs was also done with Haploview using the YRI as the reference population, pairwise tagging and a r2 threshold of 0.8.
Individual stems in the Jurupa population were tagged and numbered.
Thus, these SNPs can be used in CEU and ASN population to tag the inversion.
