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By contrast, the 454 library preparation involves random shearing of the normalized but un-cloned cDNA population, fragment end polishing, adaptor ligation, library immobilization, fill-in reaction, single stranded DNA library isolation and pyrosequencing [ 2].
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Unless the environment has changed drastically since a population became fragmented and the population fragments have become locally adapted, outbreeding depression is not expected to be a problem at this scale as increased connectivity only restores the previous situation.
The genetic effect of habitat fragmentation depends largely on the level of gene flow within and among population fragments.
First, the variation can be replenished by gene flow between population fragments.
Improving gene flow and connectivity between the population fragments that previously formed a single large population is the first step.
This technique can be used by wildlife managers and road planners, and may be particularly important in reduction of road mortality for species such as the Iberian lynx (Lynx pardinus), Florida panther (Puma concolor coryi), and Texas ocelot (Leopardis pardalus), which exist in small populations fragmented by development, and are limited by road mortalities.
To complicate matters even further, many Southeast Asian countries such as Malaysia are ethnic melting pots with multiple different ethnic populations, fragmenting the consumer market even further.
The lymphocyte subpopulation was gated according to standard Forward and Side Scatter parameters, in order to avoid irrelevant larger cell populations or smaller cell populations, fragments and debris.
However, wide isolation windows in DIA-MS generate MS/MS spectra containing a mixed population of fragment ions together with their precursor ions.
Under the null hypothesis of non-directional evolution, where in the absence of directional selection a microsatellite expands as often as it contracts within an infinite population, PCR fragment length distributions of orthologous microsatellites would be expected to be similar [ 80].
Previously, two similar high-throughput methods were developed for the identification of protein binding regions using a large population of fragments derived from DNAs (plasmids, bacteriophages, bacterial chromosome and human genome fragment) ranging in size from 3 kb to 4,700 kb [ 10, 11].
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