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In Mandarin, the popular sequence 518 can be interpreted as, "I want to prosper," and 168 sounds like, "A road of prosperity".
That meant the first scenes of "The Apprentice" played out directly against the final scenes of "Survivor," which usually include the popular sequence in which the castaways vote someone off the island.
Using the popular sequence searching tool, BLAST, Block Cluster calculates similarities between blocks so that blocks with similar functionalities are grouped and considered as candidate blocks for the sitemap.
Via an extensive evaluation on both synthetic and real datasets, we show that Prism outperforms popular sequence mining methods like SPADE [M.J. Zaki, SPADE: An efficient algorithm for mining frequent sequences, Mach. Learn. J. 42 (1/2) (Jan/Feb 2001) 31 60], PrefixSpan [J. Pei, J. Han, B. Mortazavi-Asl, H. Pinto, Q. Chen, U. Dayal, M.-C.
Another popular sequence search tool is BLAST.
Popular sequence alignment tools such as BLAST cannot align short sequences with specific bulges or mismatch configurations [ 46].
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Before the next generation sequencing technologies (Zhang et al. 2013) were developed, the most popular sequencing method was the Sanger method, which was applied to the EST sequencing project.
Another example is the Illumina BaseSpace Sequence Hub (https://basespace.illumina.com/home/index), which is a cloud-based genomics analysis and storage platform provided by the producer of the currently most popular sequencing machines.
Its push-button operation delivers a one-day turnaround for a number of popular sequencing applications, including one whole human genome and up to 16 exomes, up to 20 noninvasive prenatal testing samples, up to 20 transcriptomes, up to 48 gene expression samples, and up to 96 targeted panels.
Directly building our method upon BLAT, we take advantage of the speed and the sensitivity of this popular sequence-to-genome alignment tool.
Finally, we asked whether the PARADIGM-SHIFT method provides complementary information to current techniques by comparing it to both a gene-expression signature-based and several popular sequence-based approaches.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com