Sentence examples for pool mapping from inspiring English sources

We used only reads aligning to the genome with the highest (least ambiguous) score, minimizing incorrect mappings such as those from the female pool mapping to the Y chromosome.

Across chromosome 9, the number of reads from the male pool mapping to each genomic block is near 250.

GC content, read length and damage all had significant impacts on the proportion of read pools able to be mapped back to their reference at both levels of divergence, while coverage depth was not significantly correlated for either low or high divergence read pool mapping (Table  1).

All of the reads from the high γ-decalactone pool mapping to the gene24414-v1.0-hybrid (hereafter named FaFAD1 and FvFAD1 for the cultivated and wild strawberry, respectively) corresponded to one unique allele, indicating that only one allele is expressed in fruits of the 10 selected siblings.

Due to the potential for slight variances in indel placement between MAVID and BWA/GATK alignments, indel events identified in read pool mapping were considered called correctly if they occurred within three base pairs of an indel event identified in the reference-sample alignment.

Briefly, 15 ul of the cDNA synthesis reaction was added to 5 ul of the multiplexed MSO pool (MAP, Illumina) and 30 ul of a reagent containing streptavidin paramagnetic particles (OB1, Illumina), heated to 70°C, and allowed to anneal to 40°C.

Recently, a Mesoamerican saturated intra-gene pool map has been constructed by combining the genetic information from intra- and inter-gene pool segregating populations [ 35].

93% of this pool mapped to the 454-contig assembly and the remainder mapped either to human, mouse, rat, or dog RefSeq databases.

Ninety-six marker pairs for C14 and 42 for C15, with a recombination fraction below 0.1, were available in all three maps (C14xC15, C15xC14 and pool map) (see Methods section).

Hence, these shared markers could be used as anchor points for map merging and syntenic analysis such as Galeano et al. [ 35] have recently reported for the consensus Mesoamerican intra-gene pool map.

The remaining 607 linked markers in the 17% pool mapped to a locus (that was mentioned, but not further validated in the initial publication) encompassing a region of 105 kbp in chromosome XV (referred to in this study as QTL5) and to three small regions on chromosomes I, VI, and XII (of which the latter one is also mentioned in the initial publication but not further validated).