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Z jik could be based on any probe measure, such as PM only or PM-IM (some other selected probe measures are listed in Table 2).
Han et al. [ 18] compared the Affymetrix MAS 5, dChip using PM-MM and PM only input and RMA.
Both PM and MM together or PM only, can be used in the Li and Wong model.
Only activity-based PM has further contribution to discriminate between groups (event-based PM: only classified an additional 5.7%, p > .10; time-based PM: only classified an additional 5.7%, p > .05; activity-based PM: classified an additional 17.2%, p < .05).05
Viewing Monday 2-4 and 7-9 pm only.
Whereas John Prescott, who was transport secretary as well as deputy PM, only had two.
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Perfect mach probe only (PM-only) was used to calculate the noise and detection limits.
Following normalization using the Invariant Set Normalization method, probe expression levels were calculated using the PM-only model.
Normalisation was carried out using Invariant Set Normalization method and probe expression values were then calculated using the perfect match (PM -only model.
Intensity values of all chips were normalized with dChip software (http://www.dchip.org) [37] and applying the model-based expression analysis algorithm (PM-only or PM/MM model) the expression values were calculated.
For the first three datasets, (Spellman, PramilaL, Pramilas - dual-channel), Loess normalisation displays better behaviour, with PM-only methods giving significant decrease in correlations between genes known to interact.
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