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Calibration was assessed using a calibration curve generated by plotting the model-predicted 5-year and 10-year survival probabilities against the observed probability, as calculated by the Kaplan-Meier method.
Without doing more experiments, the only method of evaluation is to plot the model alongside scatterplots of the data.
For each parameter we increased and decreased its value ten-fold, re-ran the simulations and plotted the model output.
The plot_source command is available for plotting the unconvolved model amplitudes.
The mean CD4 count and percentage evolution were depicted by plotting the mixed model predictions.
If the data set is grouped, the model will also be grouped (use plot_model to plot the ungrouped model with the grouped data).
Please use the get_model_prof command if you want to plot the convolved model values.
Without the confounder terms we cannot plot the full model with confounders.
A general-purpose numerical solver is used for solving the model and plotting the pertinent results.
28 The method involves plotting the net benefit of the model against the threshold probability.
Because of this, it is impractical to plot the prediction models.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com