Plotting the array probe intensities against chromosomal coordinates generated high-resolution maps of expression and epigenetic mark enrichment across each locus (plots for miR-205 are shown in Figure 1A & 1B as examples).
In order to characterize potential molecular mechanisms implicated in sperm damage, an apoptosis protein antibody dot plot array analysis was performed before and after sorting.
A completely randomized block design in a split-plot array with four replicates was used with IR as the main treatment and the soybean MGs as the sub-treatment.
Let us consider a two dimensional plot (array with elements F ( i 1, i 2 ) ) with horizontal numbering related to the i 2 index and vertical numbering related to the i 1 index; [ F ( 1, 1 ) F ( 1, 2 ) ⋯ F ( 1, N 2 ) F ( 2, 1 ) F ( 2, 2 ) ⋯ F ( 2, N 2 ) ⋮ ⋱ ⋮ F ( N 1, 1 ) F ( N 1, 2 ) ⋯ F ( N 1, N 2 ) ].
These ramets were a part of the population but outside of the plot array.
Additionally, the similarity of replicate samples (3) to each other was verified by plotting the arrays on a two dimensional display using principal component analysis.
Additionally, the similarity of replicate samples to each other was verified by plotting the arrays on a two dimensional display using principal component analysis (Additional file 1B).
Chromatograms are shown by plotting the arrays of trace data of the four channels A, G, T and C using spline interpolation (Ahlberg and Nilson, 1967).
The four different metrics which were binned into 100 groups according to their array-derived MAF plotted against array-derived MAF are shown in Fig. 2.
Regression analysis of inverse cycle threshold values plotted against array fluorescence intensity was used to confirm relative abundance of L. casei reported by the array and concordance between the two independent molecular methods.
