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(E ) Heatmaps and average plots of input and cenH3 N-ChIP signal within a 2-kb window around all 707 cenH3 peaks.
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(B ) Summary plots of input-normalized ChIP-seq signals along typical (TE) and super enhancers (SE) (Whyte et al., 2013 ).
Figure 10 Plot of input rate vs. throughput for a sample topology, without RTS/CTS.
Using antibody staining and image processing methods, it is thus possible to collect thousands of points on a scatter plot of input (Bicoid concentration) vs. output (Hunchback protein concentration); since even in a single embryo there are many nuclei that have the same Bcd concentration, one can examine both the mean Hunchback (Hb) response and its variance.
A linear correlation was confirmed by the plot of input amount of RNA (X-axis) vs. Ct values (Y-axis) with minimal deviation among duplicates or triplicates.
In plot c, a time domain plot of the input signal x(n) is shown.
The consistency between biological replicates was checked by the density scatter plot of the input and ChIP DNA intensities among all replicates (see Additional file 1, 2 for H4K16ac ChIP replicates in male adult files, Additional file 3, 4 for H4K16ac ChIP replicates in female adult files and Additional file 5 for other histone marks).
For this branch we have also plotted the range of input currents (J_{E,I}) along the activation functions.
The results from two independent experiments were averaged and plotted as percentage of input.
ChIP efficiency was determined by plotting the percentage of input chromatin that was immunoprecipitated in the experiments.
Enrichment of H3K4me3 and H3K27me3 in each locus is normalized to that of TUB8 ; H3K9menrichmentent is plotted as percentage of input.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com