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Hydrogen bonding patterns of residues were determined and compared using the hydrogen bond plot tool HBplot (VirtuaDrug, Hungary)20,21.
We developed a two-dimensional visualization plot tool for positive control and specific spots, which allowed facile and minute differentiation between spot intensities.
The images were analyzed with the PlusTipTracker software and the Quadrant Scatter Plot tool.
The 'beam-cost plot' tool is presented as a visual aid to the selection of beneficial beam directions.
This plot tool is appropriate for the proposed model as it produces an appropriate representation of the trajectory of the studied mobile.
For the identification of differentially expressed genes, the Filter on Confidence function was used with a t-test P-value cutoff of 0.05, and a fold change threshold of 1.0 for the gene list was generated using the Filter on Volcano Plot tool.
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Genomic plots were produced with Circos and links between orthologs were bundled using the bundlelinks utility from the Circos plot tools package with parameters set to –strict -max_gap 1e6 -min_bundle_size 2e5 (Krzywinski et al. 2009).
Some interactive dot plot tools show annotation data of the sequences (Engels et al., 2006; Jareborg and Durbin, 2000; Wilson et al., 2001), but they are on-site programs, i.e. the users should install them on the platforms that the developers specify.
Other resources include an online plotting tool and links to statistics guides from other publishers.
Established and well-documented software tools are the mini-GIS PanMap, the plotting tool PanPlot, and Ocean Data View (ODV) for the exploration of oceanographic data.
In addition to this, viewing the SST-1 diagnostics signals across the network using JSCOPE and browsing the signals using Web is also described, along with a matlab plotting tool for the SST-1 diagnostics data.
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