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Channel profile, i.e., plot of radius vs. distance from the start point (left), together with a list of lining amino acid residues and physicochemical properties (right).
However, when a principal component analysis (PCA) was performed using the values of REC, DET and ENT for all the 160 frames, and the first principal component (Factor1) was plotted vs. unfolding time, it was observed (Figure 4 (bottom panel)) that there were two distinct phases (similar to the plot of radius of gyration vs. time in (Figure 4 (top panel)).
Plot of radius of gyration of protein vs. time is shown in Figure 2c.
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Figure 4 (top panel) shows a plot of the radius of gyration of the protein as unfolding proceeds.
This occurs between 2.0 and 2.25 ns and could thus be taken to represent the TS and which also corresponds well with the putative TS inference from the plot of the radius of gyration with unfolding time.
It is also possible to quantify branching from a logarithmic plot of the radius of gyration against the molecular weight [ 17].
A plot of the radius profile obtained from the 20 ns simulation accompanied by a snapshot of the AqpM constriction region showing the conformation and position of relevant residues are presented in Figure 5a and Figure 5.b, respectively.
Figure 2 shows a plot of the radii (R_{L1}), (R_{bk}), (R_{y}), (R_{z}) and (R_{eq}) as a function of q for the range (0.01 le q le 100) with the radii calculated using the code described here.
A plot of the spot radius R as a function of threshold h is shown in Figure 4.
The compactness exponents determined from the power-law plots of the radius of gyration vs lengths suggest that the scaling theory underestimates the polypeptide compaction in the gas phase.
The plots for monomers of radius ≥0.7 micron show an oscillating behavior in circular polarization, with a decreased magnitude of circular polarization in forward and back scattering regions.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com