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This was for instance the case of Hbp and its identified hit: when its plausible pose given by FlexX was re-scored by the other programs, the rank of the molecule was improved, going from 14 to 4 with Glide, from 265 to 61 with Surflex and from 368 to 90 with Gold.
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The resulting conformations of the studied compounds were analyzed and the most plausible poses were selected based on their ability to create similar interactions as the one of the reference inhibitor.
Both approaches have to inspect the ligand's plausible poses around a binding site, but local docking reduces the search space on the target's surface and, thus, the required computing time.
The selection of most the plausible structural pose(s) was done by observation of the energy minimization score results.
"A spinning Venus seems theoretically plausible, but would the pose actually work?
They cannot remove anything unless it is a weapon or can pose a plausible threat to the investigation's safety.
It has yet to pose as a plausible alternative to Mr Kabila.
Each subunit of the transporter contains nine transmembrane helices and two hairpins, posing a plausible pathway for substrate transport.
The molecular revision, appropriately interpreted, poses a plausible origination scenario for the origins of tiger subspecies with conservation implications for their past, present and future.
Vmusc-based estimates are similarly robust, with the high rates of muscle activation, and hence locomotor cost that are expected for the range of plausible musculoskeletal anatomy and poses in these species.
Even if the threat from today's bird flu fades, it is plausible to think that another virus, in the not-too-distant future, may pose another threat.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com