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These differential Y-ions in different MS/MS spectra of glycopeptides could, in part, facilitate the plausible assignment of the glycan composition.
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The taxonomic assignments of LCA, SPANNER, best BLAST, SOrt-ITEMS and CARMA3 are summarized in Figure 5, which highlights plausible assignments to the 13 identified KB-1 taxa.
The very same optimization algorithm then derives the most plausible heading assignment for every frame.
The proposed optimization algorithm computes the most plausible identity assignment throughout the entire video by maximizing ∑ s + ∑ t under the flip operation.
The proposed optimization algorithm (Section 3.4) uses a dynamic programming approach to compute the most plausible identity assignment by maximizing ∑ s + ∑ t under a flip operation.
The most plausible identifier assignment is determined correctly - despite wrong evidence coming from bocT in τ 41.56 and two proximate ε values in τ 41.55 and σ 41.57.
Manually overruled τ i sequences are assigned with a t value of T _MAX=Ω·m+1 such that machine decisions cannot vote them down and the most plausible global assignment is adapted accordingly.
The optimization algorithm (see Algorithm 4) will compute the most plausible heading assignment for all video frames by maximizing ∑ s + ∑ t under the flip operation introduced in the Section 3.3.
The certainty scores of s- and t-methods are turned into logodd values that are comparable to each other such that the most plausible identity assignment for the entire video is achieved by maximizing the sum of these logodd values under a flip operation (cf. Section 3.3).
This should integrate over the distribution of unknown stimulus values <img src="http://journals.plos.org/plosone/article/asset?id=info?doi/10.1371/journal.pone.0004205.e060.PNG" class= inline-graphic"/> (since subjects are not directly asked about these) in determining the most plausible model (assignment of oddity).
Plausible functions are assigned to 463 currently unannotated proteins by our method, and we discuss some of these novel assignments.
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