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In these analyses only the information from the plain sequence was used.
We performed a simple but complete evaluation of the family models presently available in Rfam, comparing scores obtained from the covariance models to scores from plain sequence models generated from the same sequence alignments (data not shown).
It can check for the presence of given regions of interest that can be constructed from reads, and then builds a short assembly around it, either as a plain sequence or as a graph, to reveal the contextual structure.
The following options were used in RNA Structure Logo: plain sequence, no field assignment, and logo type 2. After collecting and characterizing physical characteristics of the IESs for each of the three P. aurelia species, we examined the location of the IESs.
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First of all, abyssal plain sequences are less likely to be incorporated into the orogenic belts that develop as continental margins are compressed during ocean basin closure.
In these cases, we recommend to obtain additional Gd-enhanced non-fat-saturated T1-weighted MR sequences with identical pulse sequence parameters as the plain sequences.
In case of clinical compression and no explanation on the plain sequences, contrast medium must be used to detect lepto-meningeal metastases (Fig. 6).
As a result, molecular biologists can now access a plethora of sequence analysis tools to help them predict functional behaviors from plain sequences (Altschul et al., 1997; Bailey et al., 2009; Giardine et al., 2005; Hofacker, 2003; Kingsford et al., 2007; Markham and Zuker, 2008; Thomas-Chollier et al., 2011).
A T2* sensitive echo plainer sequence was employed with parameters of TR = 500 ms, TE = 28 ms, flip angle = 20°, phi = 270.
Again, there do exist prefix-free random sequences, since we know that there are plain random sequences, and given the greater length of a prefix-free encoding, we know that the prefix-free code of ordinary random sequence will be generally longer than an arbitrary code of it, and thus random too.
The analysis mode computes property scores from plain biological sequences.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com