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To overcome these limitations we present Orione, a Galaxy-based framework consisting of publicly available research software and specifically designed pipelines to build complex, reproducible workflows for next-generation sequencing microbiology data analysis.
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In recent years a number of therapies have started progressing along the pre-clinical pipeline to build a case for regulatory approval and ultimately clinical adoption.
The move does not mean the government has granted right of way for the pipeline to build its last remaining stretch under the Missouri River near Cannon Ball, North Dakota, according to the Army Corps of Engineers.
Therefore we opted for an integrative pipeline to build the transcriptome.
We described a pipeline to build ortholog annotations for comparative transcriptome analysis between closely-related species.
We then used RPono, a package in the Phusion2 pipeline, to build supercontigs.
This paper proposed GASS, a computational pipeline, to build genome annotations based on species similarity.
We created an automated phylogenomic pipeline to build gene trees for KEGG-annotated contigs from A. tamarense Group IV.
Our approach, using an automated phylogenomic pipeline to build taxon-rich gene trees, suggests that LGT is more extensive than previously thought.
Transcripts generated by these two methods were combined using the "Program to Assemble Spliced Alignments" (PASA) (Haas et al. 2003) pipeline to build a complete set of unique transcripts corresponding to gene models.
Based on the 528 Mbps Mo17 contigs and 2.5 Gbps B73 genome sequences, we developed a pipeline to build a macro-syntenic map for these two inbred lines (see Methods).
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