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Tools that perform analyses of this kind are available on software suites and within bioinformatic pipeline packages [ 6, 7].
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We developed an analysis pipeline package, CpGPNP, to integrate CpG island prediction and primer design.
We present a Python-based data reduction pipeline package (PLP) for the Immersion GRating INfrared Spectrograph (IGRINS), an instrument that covers the complete H- and K-bands in one exposure with a spectral resolving power of 40,000.
The AA-ALIGNER pipeline package is available online [ 34].
Firecrest, Bustard and Gerald are part of the Illumina Analysis Pipeline package.
The pipeline package, AGSNP, and the discovered 497,118 Ae. tauschii SNPs can be accessed at (http://avena.pw.usda.gov/wheatD/agsnp.shtml).shtml
Augustus was trained using the training pipeline packaged with the software (autoAug.pl) and the assembled 454 isotigs from both samples as evidence.
Methods and Results: Tandem repeat motifs of 3 6 bp were searched using a simple sequence repeat (SSR)–pipeline package in coding portions of the date palm draft genome sequence.
There, the data is transformed into sequence by means of Illumina's Pipeline software package, which consists of three executables: Firecrest, Bustard, and Gerald.
The pipeline software package is available at our website (http://nbase.biology.gatech.edu).edu
Image data acquired from the sequencing run was base-called and quality analyzed with the Illumina Genome Analysis Pipeline software package.
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