Of the 50 items on the list, ACP was the sole pipeline named.
For this reason, we decided to the three-step approach within a combined, modular pipeline named "TEdenovo".
A combined pipeline named TEannot for the genome-wide annotation of TE copies is already available [24] (Figure S2).
To enable real-time analysis of nanopore sequencing data, we combined pathogen identification with monitoring and user-friendly web visualization into a real-time bioinformatics pipeline named MetaPORE.
We then created a pipeline named XSAnno, which generated a model of orthologs by combining whole genome alignment, local alignment and multiple filters to remove regions with difference in mappability (DIM) between species.
To address these challenges, we developed a bioinformatics pipeline named RFAPtools that included three modules: assembly of a pseudo-reference sequence, SNP discovery and genotyping, and discrimination of allelic SNPs from homoeologous loci.
We have developed a multi-step viral genome assembly pipeline named VirAmp, which combines existing tools and techniques and presents them to end users via a web-enabled Galaxy interface.
Here, we present a highly-efficient and easy-to-use analysis pipeline, named MeRIP-PF (MeRIP-Seq data peak finding), which is a publicly-available tool and specially developed for the peak-calling of MeRIP-Seq data.
In order to estimate the total number of different genes present in representatives of the B. breve species, and the expected number of new genes for every inclusion of an additional B. breve genome, we applied a pan-genome analysis pipeline named PGAP v1.0 [ 26].
Enbridge's inability to adhere to minimum safety standards is yet another of a long list of examples of this policy's failure - San Bruno, Yellowstone, and TransCanada's Keystone I tar sands pipeline to name just a few.
