Sentence examples for pipeline format from inspiring English sources

Because the 'consequence' strings in the VCF information field contain a wealth of parseable information, Olorin supports further processing of two variant consequence string formats: the UK10K analysis pipeline format and the Ensembl Variant Effect Predictor format (McLaren et al., 2010).

When formatting documents with roff, commands are added to the pipeline to format figures, tables, equations, etc.

Output of the Trinotate annotation pipeline, tabular format.

Left unchanged was the Pipeline gene annotation format, in which sequential orfs were counted in fives, to allow later insertion of additional orfs in series when needed.

The Perl pipeline produces this format using with Perl scripts with Linux utilities sort and uniq.

By using the Genome Center pipeline with this format, a 1-wk turnaround time between oligonucleotide orders and delivery of sequencing results can be obtained.

The 'StandardAnalyzer' component is replaced by a simple transformation of the XML output of the pipeline into a format suitable for internal processing by Lucene.

Here we present a novel bioinformatics pipeline for downloading, formatting, filtering and analyzing public sequence data deposited in GenBank.

Reads can be supplied in the ubiquitous FASTA or FASTQ formats, and will be automatically converted in the Tentacle pipeline to the correct format for the selected alignment program.

Figure  1 depicts the pipeline in a graphical format.

Read sequences produced by the Illumina pipeline in the FastQ format were first pre-processed.