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In order to speed up the computation process, pipelined data processing architectures have been employed leading to a speed up of approximately three times.
Both technologies are here to stay, with Spark being adopted for a broad set of use cases, including pipelined data processing and parallelizable data-science workloads.
Pipeline of data processing.
The Illumina data processing pipeline version 1.4 was applied in image analysis and base calling.
The inbound data stream can be passed through data processing pipelines based on Cloud Dataflow via Cloud Pub/Sub.
We implemented a custom analysis pipeline for small RNA sequencing data processing.
The values of each ROI were extracted using pipeline software Neuroelf (a pipeline fMRI data processing software based on SPM5. Please visit neuroelf.net for more information).
We collected the RNA sequencing data from two studies23, 28 and preprocessed them using a NGS pipeline for data processing to facilitate their downstream analysis (See Materials and Methods, Fig. 1 and Table 1).
PR-CALC is straightforward to use, and integrates directly into the conventional pipeline for data processing and analysis.
The whole pipeline involving data processing and CNVR identification is illustrated in Figure 3.
Bioinformatics were performed at Genome Québec using Qiime (version 1.7.0) the pipeline for data processing.
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