Sentence examples for pipeline comparison from inspiring English sources

To this end, we present here a systematic practical pipeline comparison of eight software packages edgeR, DESeq, baySeq, NOIseq, SAMseq, limma, Cuffdiff 2 and EBSeq, which represent the current state-of-the-art of the field.

Data in Fig.  2a and b were quantile-normalized by the TCGA pipeline, allowing comparison of abundance of a particular transcript (such as total ELF5) between samples.

Our pipeline (Genome Comparison and Analysis Toolkit) has allowed us to characterize, in detail, the composition and diversity of approximately 1 million introns in these teleost genomes and provides a valuable open source extensible platform for comparative genomics of introns and other genomic components.

In evaluating the assembly quality of different assemblers, several criteria were used in choosing bench-mark data sets, assembly-pipelines and comparison metrics: e.g., statistical significance, ease of reproducibility, accessibility in public domain etc.

We instead opted to build a render comparison pipeline to ensure consistency between various renderers (this pipeline is described in more detail in Section 3.2).

This highlights the strength of the SMSD and its ability to calculate the MCS in a reasonably acceptable time without clogging the comparison pipeline.

We therefore complemented it with information taken from the AltSplice database, which is generated by an automated computational pipeline involving the comparison of EST/mRNA alignments with genomic sequences [16].

Third, the rendering comparison pipeline has ensured that conversion of SBGN-ML to graphical formats is straightforward.