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It consists of two cylindrical layers of double-sided, double-metal silicon sensors read out by a custom designed analog pipeline chip.
The APV25 is a 128-channel analogue pipeline chip for the readout of silicon microstrip detectors in the CMS tracker at the LHC.
The CST uses double sided, double metal layer sensors; it is read out with a specifically designed analog pipeline chip (APC), the signals are transmitted optically.
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The Tracker readout system employs Front-End Driver cards to digitize and buffer the analogue data arriving via optical links from on detector pipeline chips.
The ChIP-seq pipeline aligns the ChIP and input libraries to the genome using Bowtie2.
A new radiation hard pipelined readout chip is being developed for the LHCb-experiment.
The custom pipeline for ChIP-seq analysis can be found at: https://github.com/Acribbs/cribbslab/blob/master/Pipelines/pipeline_quantchip.py.
The Beetle is a 128 channel analog pipelined readout chip which is intended for use in the silicon vertex locator (VELO) of the LHCb experiment at CERN.
Thus, peak finders can be integrated with peak finding tools to provide a comprehensive pipeline for ChIP-Seq analysis, as with GADEM [ 109].
This chapter presents the pipeline of a ChIP on chip method that can be applied to map the binding sites of chromatin‐associated proteins along Drosophila chromosomes at different developmental stages.
Other integrated pipelines for ChIP-Seq data are available, for example, MICSA [17], CEAS [50], and Sole-Search [51].
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