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For the clustering experiments, two molecular fingerprints were developed by Scitegic's Pipeline Pilot software [26].
The calculations of pairwise Tanimoto similarity were conducted using Pipeline Pilot software.
These descriptors are widely used as part of the Pipeline Pilot software [42].
The 1024-element fingerprints were generated using the Pipeline Pilot software.
Peptide sequence of target protein was searched for alignment using protein pilot software (Uniprot 2012).
FIBRES is a decision making pilot software for design education in the area of bridge engineering.
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Part of this effort is the development of pilot educational software.
Clusters were generated, using the Cluster "Clara" algorithm embedded in the Pipeline Pilot (PP) software [37] by employing an atom type fingerprint as a chemical descriptor and Euclidean distance was the distance metric selected.
Protein identification and quantitation were performed using the Paragon algorithm as implemented in Protein Pilot 2.0 software (ABI/MDS-Sciex).
The original data files were analyzed using the Protein Pilot 2.0 software from a combined database (Swiss Prot 2005, TrEMBL, NCBI and PDB).
Team building and collaboration by and large were as important in this pilot as software development skills, because they are crucial to solve today's complex development problems.
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