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The MASCOT probability score for the match, molecular weight (MW), isoelectric point (pI), number of peptide matches and percentage of the total amino acid sequence covered by the peptides were comprehensively analyzed for confident spot identification.
These genotypes are listed here by their Germplasm Resources Information Network Plant Inventory (PI) number and include accessions 236579, 612323, 612495, 612498, and 612499.
A mutant line, carrying a premature stop codon mutation in the GmGIa (E2) gene, and the original variety [Bay; PI553043, plant introduction (PI) number deposited in the National Plant Germplasm System in the United States] were sown on June 23 , 2008 at the National Institute of Agrobiological Sciences, Tsukuba (36°02′ N, 140°11′ E) and grown under natural day-length conditions.
We calculated phylogenetic informativeness (PI) [ 40] per nucleotide site for the three UCE and the 10-gene data sets with the software package TAPIR [ 41] (http://faircloth-lab.github.com/tapir/), a parallelized version of PhyDesign [ 42].> -wrap-foot> Summary of number of loci, length of matrix, mean PI, number of data partitions and type of analyses for the four data sets used in this study.
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Glycine species used and locations where they were collected are in Table 1 along with their genome types and known USDA permanent plant introduction (PI) numbers or IL number designated by Dr. T. Hymowitz.
Origin and United States Departmentof Agriculture – Agriculture Research Service National Plant Germplasm System plant introduction (USDA-ARS NPGS PI) numbers of accessions used in hybridization studies.
The detailed list of the identified proteins with their theoretical molecular weights, pIs, number of matched peptides and their respective expression profiles are reported in Table S1.
In addition to the CFD simulation, a dimensional analysis was conducted to find pi-numbers that govern the process of particle formation; three pi-numbers were identified.
Abbreviations: Total = combined data set, Molecular = only DNA sequence data, Inversions = only inversion data, CI = consistency index, RI = retention index, PI = number of parsimony informative characters in the data partition, ST = length of shortest tree, #T = number of most parsimonious trees obtained in the analysis, nch = number of characters in the data set, ntx = number of taxa.
Synergetic Geometry was based on sixty-degree (rather than ninety-degree) angles, took the tetrahedron to be the basic building block of the universe, and avoided the use of pi, a number that Fuller found deeply distasteful.
Pi = Number of people in land use i.
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