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Consequently, our knowledge of the biological assemblages that inhabit these environments and the potential ecological, biogeographic and phylogenetic linkages among those in different locations or habitats is limited.
The taxonomy of the genus cannot be considered as finally established one because the phylogenetic linkages between the individual taxa have not been sufficiently investigated.
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It did not, however, take precedence over phylogenetic linkage determinations.
This second phase of sequencing did not reveal phylogenetic linkage between the partners in any of these pairs, again suggesting that superinfection was not occurring.
A phylogenetic linkage of teleost and mammalian prion genes has been established earlier [38] and therefore conclusions drawn from teleost sequence alignments are also relevant for establishing evolutionary relationships of mammalian prions.
In short, the existence alone of genetic similarity or phylogenetic linkage among viruses cannot show beyond doubt that direct transmission occurred between two individuals.
With the advent of new whole genome exploration tools, we are better able to understand phylogenetic linkage between and among strains.
Our sequence data confirmed a phylogenetic linkage between AIEC and extraintestinal pathogenic E. coli causing urinary tract infections and neonatal meningitis.
In order to study the phylogenetic linkage between META1 and HslJ, we generated a phylogenetic tree based on the protein sequences of META1 homologs in trypanosomatids and HslJ homologs in bacteria.
The phylogenetic linkage analysis of whole arrays of mtDNA mutations from patient cancerous and non-cancerous tissue confirmed that artificial recombination events occurred in studies of head and neck, adenoid cystic carcinoma, sessile serrated adenoma, and lung primary tumor.
We demonstrate here that the phylogenetic linkage of whole arrays of mtDNA mutations provides strong evidence of artificial recombination in previous studies on buccal cells and oral squamous cell carcinoma.
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