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In this present study, Pseudomonas aeruginosa phosphatase was selected for a detailed computational investigation to exploit its physicochemical characteristics, structural properties including 3D model, model quality analysis, phylogenetic assessment and functional analysis using a number of available standard bioinformatics tools.
The general topology obtained by performing Bayesian inference (Figure 2) supports previous phylogenetic assessment of the shearwaters, performed using different optimality criteria [18] [21].
Our phylogenetic assessment of orthology in these OBPs is robust across all alignment methods (despite moderate branch support in some cases), suggesting that the assignment is accurate.
This study was motivated by the genomic homogeneity and the difficult phylogenetic assessment of genus Brucella.
Twenty-two taxa were used for phylogenetic assessment of the Vellberg jaws.
Our phylogenetic assessment put LsRXR in a group with USP and similar receptors from insects and not with the malacostracans.
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A secondary goal of this investigation is, however, a demonstration of the potential utility of the nu ITS2 rRNA as a DNA barcode for the Chlorophyta as tested against phylogenetic assessments based on other markers.
This enables previous phylogenetic assessments of the order, which have been performed at smaller scales, to be placed into context.
Furthermore, the phylogenetic assessments based on the neutral markers have also shown the clustering of north Indians with other Caucasian populations [ 39, 40].
Epidemiologic and phylogenetic assessments suggest that this may have been caused by a period of frequent iatrogenic transmission that took place around the 1950s [ 76].
The main difference between these two sets of phylogenetic assessments is the proportion of Dhc within the datasets, where the annotated raw reads (MG-RAST) provide a more accurate depiction of the enrichment levels of Dhc within these consortia.
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