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The algorithm works by chopping up input sentences into "phrasal units," says Kevin Knight, senior research scientist at ISI.
In our manual search for the source domain concepts, the unit of analysis was between the word and the clausal level, with many idiomatic phrasal units in between.
"Run over" is a unit called a phrasal verb, which is usually a verb-preposition combo in which the preposition gives the verb a distinct meaning.
Phrasal is available on Github.
Gappy Phrasal Alignment by Agreement.
Phrasal etymologists, start your search engines!
There is a considerable linguistic debate on whether phrasal verbs (e.g., turn up, break down) are processed as two separate words connected by a syntactic rule or whether they form a single lexical unit.
The study examined three categories of multi-word verbs (phrasal, prepositional, and phrasal-prepositional verbs) in comparison to free combinations.
What phrasal category set does the parser use?
Phrasal Translation Generation for Highly Inflected, Low-Resource Languages.
However, DARE notes that "numerous phrasal references to cats suggest another source".
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com