Sentence examples for phased data from inspiring English sources

Applying the update option that uses previously phased data and therefore does not require the long-range phasing step to be re-run, decreased the computation time to six hours.

This analysis was not affected by phasing ambiguities because we calculated r directly from the genotypes rather than phased data (e.g., Boyko et al. 2010).

GenADA genotype data (after QC) were imputed using Mach (http://www.sph.umich.edu/csg/abecasis/mach/, [42] [43]) based on reference haplotypes from HapMap III phased data (release 2).

To investigate LD with polymorphisms not genotyped in the discovery dataset we downloaded phased data for individuals from the HapMap CEU population (Utah residents with ancestry from northern and western Europe), including classical HLA typing data for the genes HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DQA1 and HLA-DQB1 (http://www.inflammgen.org) [30].

HapMap data consists of genotype and phased data from four populations: 30 trios from the Yoruba people of Ibadan, Nigeria; 45 unrelated Japanese individuals from the greater Tokyo area; 45 unrelated Han Chinese from Beijing; and 30 trios from Americans of Northern and Western European origin.

For the long-range phased data, we applied the test for positive natural selection of Sabeti et al. [33], based on the Extended-Haplotype-Homozygosity statistic, which measures if a specific allele/haplotype under selection shows a higher LD with the sorrounding genomic region.

The good fits to phase data can thus be viewed as a validation of our model.

Tools for phasing data from short PE reads (novoPhase, available at http://www.gene.cimr.cam.ac.uk/todd/).ac.uk/todd/

The model proposed in [20] comprised of four interconnecting phases: data collection phase, data storage phase, data processing and analysis, and knowledge creation.

In the data transmission phase, data of SUs are transmitted.

Thirty-second dual-frequency phase data were used for processing.