The advantage of the new coupling PH-CPL software is highlighted in terms of parallel capabilities.
In Table 5, we give the maximum size of the simplicial complex for which we were able to compute PH with each software package in our benchmarkings.
PH adjusted the software for the BAC-fishing assemblies and advised on the deconvolution of pooled BACs.
During the multi-time-step co-computations involving two finite element codes (explicit and implicit FE codes), the tasks carried out by the coupling software PH-CPL, based on a variant of the PH algorithm, are illustrated and compared to the coupling software GC-CPL based on the GC algorithm.
In addition, the PH-CPL coupling software alleviates the dissipative drawback of the GC method at the interface between the subdomains.
The data were recorded on a portable digital data logger (Sandhill Scientific) and analyzed on proprietary pH-impedance analysis software (Bioview Analysis, Sandhill Scientific).
Hydrogen atoms were added to the system according to expected protonation states at physiological pH using the Molecular Operating Environment MOEE) software package, and Na + were added manually in the vicinity of each phosphate group to produce an overall neutral structure.
The determined values were compared with the conductivity values calculated by a pH & Conductivity Calculator software.
The variations in the conductivity of the solution versus temperature calculated by the pH & Conductivity Calculator software were in more agreement with the impedance based Rsol values determined in this study.
The area between reference pH (AUC5.7 and AUC6.2) and the pH curve was calculated using "Plaque-pH" software [ 19].
