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For this reason we suggest using BLAST or SSAHA2 for exploratory sequence comparison since trial-and-error databases can be created and destroyed rapidly, but to select Simrank for persistent datasets where various queries will be compared to a fixed set of sequences.
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A = Accessibility is achieved by assigning persistent identifiers to the datasets and again associating them with appropriate metadata to enable automated retrieval processes if appropriate.
It makes use of OAI-ORE [22], a standard well designed for describing complex digital objects, here exposed through DataCite metadata [8], another de facto standard that is tightly coupled to the persistent identifier of the dataset.
JSmol allows data to be loaded by specifying either a URL (Table 1, examples 1 3, 5) or by using custom JavaScript code [28] to pre-assemble a URL (Table 1, examples 4, 6 8) from the response obtained by querying the metadata associated with the persistent identifier for the dataset.
Then, XPN was used in serial increments to bring the five cohorts into uniform agreement by removing persistent systematic bias between the datasets.
The dataset(s) supporting the conclusions of this article is (are) available in the [repository name] repository [unique persistent identifier and hyperlink to dataset(s) in http:// format. The authors declare that they have no competing interests.
The data set supporting the results of this article is available in the TreeBASE repository [ 75], [unique persistent identifier and hyperlink to dataset in http://purl.org/phylo/treebase/phylows/study/TB2 S15910].
The data sets supporting the results of this article are available in the LabArchives, LLC, repository, DOI 10.6070/H4222RRG [unique persistent identifier and hyperlink to dataset(s) in http:// format will be submitted and provided if accepted].
The tool allows the user to retrieve and save a persistent identifier (such as a DOI) for their dataset from their chosen repository.
We compare results from single-fiber tractography using diffusion tensor imaging and from multi-fiber tractography using reduced-encoding persistent angular structure (PAS) MRI on standard DWI datasets from healthy human volunteers.
The entire dataset is associated with a single persistent identifier [43] expressed as a compressed archive that a user can download and expand into a folder containing 133,886 individual files.
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