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The significance of the true GCS was determined as the number of permutations having a score higher than the true score, e.g. if 1 out of the 10,000 permutations had a GCS higher than the GCS calculated from the expression values from TFs in a specific pathway the p-value would be 0.0001.
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Thus, circular permutations have a higher number of optimal solutions than linear permutations.
The genome-wide significance threshold, estimated using 10,000 permutations, had a value of F = 12.28 (α = 0.05).
A permutation test with 1,000 permutations had a 95th percentile of 3.0 for each year's height data, and this was used as a genome-wide LOD threshold.
(C ) None of the 10,010 permutations had a comparable or stronger phase difference (left panel) analogous to that shown by vertical black and red lines in Figure 5C or a comparable Wilcoxon test z-score (middle panel).
For each sample, GENETIX calculated the number of loci pairs in which 5% and 1% of the permutations had a smaller value than the actual value for the sample.
Moreover (middle panel), none of the permutations had a similarly high Wilcoxon statistics (reported in top left corner of Figure 5C ) as the experimental data; Wilcoxon test statistics were converted to z-scores in order to ensure comparability between experimental and permutated data sets, which differ in the number of rhythmic transcripts (N = 182.1 ± 10.6; mean ± SD).
When an appeals court first heard the case in 2006, judges uttered and examined the key word, considering whether its every permutation had a sexual connotation.
There is also a nice example of some reasoning in terms of a diagram which gives the idea for a proof ("suggests a proof strategy") for the lemma that every non-crossing permutation has a neighbouring pair.
Each 7 nt permutation had a BLASTn e-value of 1.3 when queried against the full Cxqdsx gene sequence, and (in the absence of a clustered distribution) can be expected to occur at least once by chance.
Each permutation has an odd or even parity relative to the starting geometry, e.g. [B, A, C, D] is an odd permutation (one swap) while [B, A, D, C] is an even permutation (two swaps).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com