Sentence examples for permutations compared with from inspiring English sources

Both theoretical probability distributions as well as gene expression datasets are employed to demonstrate that the proposed tail approximation strategy leads to an accurate estimation of the correct P-value using far fewer permutations compared with the standard empirical approach.

To explore how circular permutations perform compared with random permutations, alternative permutation strategies were applied to the distance 0 dataset.

> -wrap-foot> The speed-up of ParaSAM was evaluated using a small dataset (22 283 genes, 40 arrays, 500 permutations) and compared with samr.

A good fit and thus accurate P-value estimates can be obtained with a drastically reduced number of permutations when compared with the standard empirical way of computing P-values.

This was precisely the case when a naïve permutation was compared with GRAIP for coat color.

In Figure 4, we can observe the hypergeometric-empirical P values obtained through the various permutation methodologies compared with the hypergeometric-theoretical P values.

The two permutation GAs are also compared with a standard non-permutation GA.

Haplotype frequencies and odds ratios (OR) with global and adjusted P values (10 000 permutations) were estimated and compared with the public "UNPHASED" software (version 3.0.12; http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/).The inflation factor for genomic control was calculated using the PLINK software (version 1.0.5; http://pngu.mgh.harvard.edu/̃purcell/plink/download.shtml).shtml

Permutation of ROH regions compared with sharing of ROH regions among individuals.

In this case, the gene-set specific test statistic is compared with the permutation values, which are obtained by permuting the class labels and recomputing the statistic.

Differences in probabilities of species occurrences among wind farm potential categories were compared with univariate permutation tests using Euclidean distance as implemented in procedure MRPP in PC-ORD (McCune and Mefford 2011b); although MRPP is often performed with multivariate data, it can also be used in the univariate context (Mielke and Berry 2001).