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My colleague John Ashdown has already given the permutations below, but that's if the rain stops now.
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The number of selected features averaged over 100 random permutations was below 0.1 for all types except READ (5.50) and STAD (502.32).
In analyzing the specific perfect motifs and the imperfect motifs, there were approximately 3061 different motifs reported in the database out of 6782 entries (this estimate refers to unique motifs with differing repeat frequencies and does not take into consideration alternative permutations described below).
Below, we detail the permutation algorithm for LOD quantiles.
Importantly, systems with a total number of combinations well above this limit can still be treated provided that the number of permutations within each group is below the limit.
The steps of the permutation are listed below.
Permutation P-values below 0.01 are considered as evidence for a difference.
We then used the permutation procedures described below to test for the significance of the correlation obtained for the averaged binned ranks of each bin size.
Briefly, for each phenotype, a permutation analysis (described below) was conducted to generate a null distribution of F statistics (F p) for each strain segregation pattern.
Because the tree is strongly supported and maximum-parsimony and maximum-likelihood analyses of the sequence data led to near-identical results, only the Bayesian tree was used in the permutation tests described below.
However, the control limits of the XmR chart are affected by permutations of the data, as is shown below.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com