Exact(1)
We used 2 different thresholds in this database: 1. 'FDR'-we used the most permissive score threshold that passed FDR<0.1 for the over representation analysis.
Similar(59)
Using a permissive scoring threshold corresponding to the log likelihood score (LLS>0.916) of non-core genome-wide Y2H screens [20], YeastNet v. 2 contains a total of 102,803 linkages covering 5,483 yeast proteins (covering >95%% of validated yeast proteome).
We therefore decided to analyze the data set using a permissive LOD score threshold of 3.5.
A permissive cutoff score of –30.0 was chosen in order to weed out potential non-binding ligands and to reduce the size of compounds tested in vitro.
One possibility is that adjacent regions are more likely to be merged into larger regions with a more permissive probe Z-score cutoff.
For the full assays in the permissive environment, we scored an average of 170 ascospores from each mating, resulting in an average of 10,168 ascospores per assay.
We experimented with two scoring variants: a permissive one, w0, and a stricter one, w1 (see Section 2).
Those who scored above the median on parental nurturance but below the median on parental monitoring were grouped into a Permissive style while those who scored below the median on both parental nurturance and parental monitoring were grouped into a Neglectful parenting style.
Higher score indicated perception of more permissive sexual peer norms.
The total length of all uniquely aligned sequence was recorded and the resulting alignments were classified into three levels: Level 1: global alignment, do not allow gaps, strict threshold for score Level 2: global alignment, allow gaps, permissive threshold for score Level 3: local alignment, permissive threshold.
For permissive accuracy (PA), a true prediction is scored for a protein if-and-only-if (iff) the true and predicted termsets have at least one term in common.
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