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In order to provide pruning opportunities when performing similarity queries, MAM employ distance functions that obey the properties defined by the metric space algebra [11].
Therefore, we present FragVLib, free software which is developed as a tool for performing similarity search across database(s) of ligand-receptor complexes for identifying binding pockets which are similar to that of a target receptor.
In [13] we presented three new split policies together with an initial set of experiments that showed their superiority over the original ones when performing similarity queries in ball-partitioning-based MAM such as M-tree and Slim-tree.
There are two approaches: 1) finding corresponding coordinates between the point cloud and BIM and then performing similarity transformation (Horn 1987; Golparvar-Fard et al. 2009); and 2) using a commercially available software to manually transform one model into the other model's coordinate system.
Assuming that the inferior performance of similarity-based approaches is due to the fact that the actives in the external set share little structural similarity with the actives in the training set, we combined our best performing similarity approach with the best performing RF model in order to improve the prediction.
Sequences containing Ty were detected in the genomic assemblies of 41 strains by performing similarity searches with the BLAST suite of programs [ 63].
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It performs similarity searches by using a shape-based superposition method that finds the similar but nonintuitive compounds.
Afterwards, the server performs similarity computation homomorphically and allows all users to decrypt the results.
By default, the website is set to perform similarity search with a Tanimoto coefficient cutoff of zero [51].
Since Web applications often use the MapReduce framework, we develop a solution to perform similarity joins in NoSQL systems using the MapReduce framework.
A chemical structure (sketched online or uploaded in multiple chemical structure file formats) is accepted as the query to perform similarity searching.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com